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Microbial Cyclic Di-Nucleotide Signaling Editors: Shan-Ho Chou, Nicolas Guiliani, Vincent T. Lee, Ute Rmling Foreword Preface Acknowledgements Table Of Contents Part I Biochemistry/Structural Biology – Enzymes Chapter 1: Cyclic Dinucleotide Signaling In Mycobacteria (AnushyaPetchiappan, AvisekMahapa and Dipankar Chatterji) Chapter 2: Structure and regulation of EAL domain proteins (Dom Bellini, Andrew Hutchin, Odel Soren, Jeremy S. Webb, Ivo Tews & Martin A. Walsh) Chapter 3: Insights into the molecular basis of biofilm dispersal from crystal structures of di-domain containing proteins (Julien Lescar) Chapter 4: Structure and function of HD-GYP phosphodiesterases (Serena Rinaldo, Alessandro Paiardini, AlessioPaone, Francesca Cutruzzol, Giorgio Giardina) Chapter 5: A unified catalytic mechanism for c-di-NMP hydrolysis by DHH/DHHA1 phosphodiesterases (Lichuan Gu and Qing He) Chapter 6: Enzymatic degradation of linear dinucleotide intermediates of cyclic dinucleotides (Mona W. Orr and Vincent T. Lee) Part II Biochemistry/Structural Biology – Receptors Chapter 7: Detection of cyclic dinucleotide binding proteins (Vincent T. Lee) Chapter 8: Non-canonical c-di-GMP binding modes (Shan-Ho Chou & Michael Y. Galperin) Part III Biochemistry/Structural Biology – Sensing Chapter 9: Sensory domains that control cyclic di-GMP-modulating proteins: a critical frontier in bacterial signal transduction (Hannah Dayton, Marina K. Smiley, Farhad Forouhar, Joe J. Harrison, Alexa Price-Whelan, Lars E.P. Dietrich) Part IV Cyclic di-AMP biochemistry and physiology Chapter 10: Metabolic regulation by cyclic di-AMP signaling (Liang Tong, Joshua J. Woodward) Chapter 11: Osmoregulation via cyclic-di-AMP signaling (Mark S. Turner,Thu Ngoc Minh Vu, Esteban Marcellin,Zhao-Xun Liang and Huong Thi Pham) Part V Population diversity Chapter 12: Measuring individual cell c-di-GMP: Identifying population diversity and c-di-GMP heterogeneity (Samuel Miller) Part VI Cyclic di-GMP and exopolysaccharide regulation Chapter 13: Activation of bacterial cellulose biosynthesis by cyclic-di-GMP (Jochen Zimmer) Chapter 14: The Regulation of Alginate Biosynthesis viaC-di-GMPSignaling (M. Fata Moradali and Bernd H.A. Rehm) Part VII Environmental bacteria Chapter 15: Cyclic di-GMP Signaling in Bacillus subtilis (Cordelia A. Weiss and Wade C. Winkler) Chapter 16: C-di-GMP signaling systems in the Gram-positive Bacillus cereus group (Wen Yin, Lu Liu, Siyang Xu, Jin He) Chapter 17: Cyclic-di-AMP in Bacillus subtilisbiofilm formation (Sarah M. Yannarell, Loni Townsley, Elizabeth A. Shank) Chapter 18: Regulation by c-di-GMP in Myxococcusxanthus (MaraPrez-Burgos & Lotte Sgaard-Andersen) Chapter 19: Light-regulated nucleotidesecond messenger signalingin cyanobacteria (Gen Enomoto, Annegret Wilde, and Masahiko Ikeuchi) Chapter 20: C-di-GMP-dependent regulation of antibiotic biosynthesis in Lysobacter (Guoliang Qian, Gaoge Xu, Shan-Ho Chou, Mark Gomelsky, and Fengquan Liu) Chapter 21: Cyclic di-GMP signalingin extreme acidophilic bacteria (Castro Matas , Daz Mauricio, Moya-Beltrn Ana and Guiliani Nicolas) Part VIII Pathogens Chapter 22: Signals modulating cyclic di-GMP pathways in Vibrio cholerae (Erin Young, Garett Bonds, and Ece Karatan) Chapter 23: Cyclic di-GMP regulation of gene expression (Meng-Lun Hsieh, Deborah M. Hinton, and Christopher M. Waters) Chapter 24: Cyclic di-GMP signaling in Salmonella enterica serovar Typhimurium (Ute Rmling) Chapter 25: Cyclic di-GMP signaling in the phytopathogen Xanthomonas campestris pv. campestris (Ya-Wen He, Wei Qian, Shan-Ho Chou) Chapter 26: Cyclic di-AMP in Mycobacterium tuberculosis (Yinlan Bai and Guangchun Bai) Chapter 27: Cyclic di-AMP signaling in Streptococcus pneumoniae (Tiffany M. Zarrella and Guangchun Bai) Part IX Gram-negative bacteria Chapter 28: Regulation of cyclic-di-GMP signaling in Pseudomonas aeruginosa (Matthew J. Pestrak and Daniel J. Wozniak) Chapter 29: Unconventional Cyclic di-GMPSignalling in Escherichia coli (Nikola Zlatkov and Bernt Eric Uhlin) Chapter 30: Cyclic di-GMP in Burkholderia spp (Grace I. Borlee, Mihnea R. Mangalea, and Bradley R. Borlee) Chapter 31: Cyclic di-GMP and the regulation of biofilm dispersion (Karin Sauer) Part X Cyclic di-GMP signaling in eukaryotes Chapter 32: Cyclic-di-GMP activates adenylate cyclase A and protein kinase A to induce stalk formationin Dictyostelium (Zhi-hui Chen, Christina Schilde and Pauline Schaap) Part XI Interference Strategies Chapter 33: Targeting cyclic di-nucleotide signaling with small molecules (Herman O. Sintim and Clement Opoku-Temeng) Part XII Novel cyclic di-nucleotides Chapter 34: Cyclic di-GMP signaling gone astray: cGAMP signaling via Hypr GGDEF and HD-GYP enzymes (Todd A. Wright, Andrew B. Dippel, Ming C. Hammond) Chapter 35: Microbial cyclic GMP-AMP signaling pathways (Miriam S. Ramliden,Geoffrey B. Severin, Brendan J. O’Hara, Christopher M. Watersd, Wai-Leung Ng) Part XIII Honorary cyclic nucleotides Chapter 36: 2′,3′-cyclic mononucleotide metabolism and possible roles in bacterial physiology (Benjamin M. Fontaine, Yashasvika Duggal, and Emily E. Weinert) Part XIV Horizontal gene transfer Chapter 37: Horizontal transfer of c-di-GMP associated genes. Theoretical underpinnings and future perspectives (Jonas Stenlkke Madsen) Part XV Conclusion Chapter 38: Conclusion (Shan-Ho Chou, Nicolas Guiliani, Vincent T. Lee, Ute Rmling, LotteSgaard-Andersen)
